Culturing Platform

Culturing Platform

The Culturing Platform at the Institute of Experimental Medicine offers a range of newly established services supporting experimental microbiome research. These include culturing assays conducted under both aerobic and anaerobic conditions, metabolomics screening, as well as the isolation and sequencing of microbial species from diverse sample types. Researchers also have access to curated biobanks containing a wide array of bacterial isolates. In addition, the platform enables the isolation of novel microbial species from various microbiome sources and supports the generation of microbiome derivatives, along with the execution of both in vitro and ex vivo functional assays.

The platform was funded by the German Research Foundation (DFG, Deutsche Forschungsgemeinschaft) as part of the Core Facilities funding programme.

Culturing workflow
Global Microbiome Conservancy biobank of microbiomes and bacterial isolates
HT culture & screening
Continuous Flow Bioreactors and Anaerobic Chamber

Beyond standard assays, the platform supports isolation of novel species, generation of microbiome derivatives, and in vitro or ex vivo functional assays. Researchers also have access to curated biobanks and technical consultation across experimental pipelines.

Equipment

  • Continuous-flow bioreactor chemostats
  • Anaerobic workstation
  • Aerobic & anaerobic incubators
  • Ultracentrifuge
  • Fragment Analyzer
  • PCR machines and more

Collaboration

Contact

Lead: Prof. Dr. Mathilde Poyet

Institute: Institute of Experimental Medicine

Team: View team page

Email: microbiomeexp@iem.uni-kiel.de

Overview of Services

  • Targeted isolation of microbes
  • Sample management
  • Culturing of user-provided microbes
  • Nucleic acid extraction
  • Library preparation & sequencing
  • Pipeline-based data analysis
  • Metabolic assays
  • Data interpretation & consultation
  • Phenotypic characterization
  • Generation of derivatives
  • Custom assays in bioreactor
  • Design of microbial communities